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Name Similarity scores Sequence Experimental verification Core Matrix MGSA/Gro-alpha 1 0.964 ccGGGAAtttccct Y IL-8 0.863 0.92 cgTGGAAtttcctc Y RANTES 0.955 0.974 ttggaaaCTCCCct Y IRF-9 NF IRF-7B 0.955 0.941 ccggaaaCTCCCgc Y STAT1 NF Chol 25 OH lase NF CYB11B1 NF IAP-1 5'-GGAAATCCCC-3' Y 5'-TGGAGTTCCC-3' Y NF-B2 (promoter 1) 1 0.991 GGGGAtcccc Y 0.955 0.906 gcggaagCTCCCgg NF 1 0.967 atgggaaTTCCCcc NF IkB epsilon NF E2Ub-conj NF GCN1 NF Comp B 1 0.943 atggaatTTCCCag NF IGFBP6 NF Type II Mem protein NF Nuclear phosphoprotein NF PTPN1 NF 5'ALA synthase 1 0.911 cgGGGAAtccccgg NF IL-15R alpha 1 0.935 gtgggatTTCCCca Y GAGE-2 NF Cadherin-like 22 NF B94 NF

[Subgroup of highly inducible genes taken from hierarchical clustering (marked by parentheses, see Figure 6) were classified by primary biological function. Shown are the core and matrix similarities from the TRANSFAC analysis for NF-B binding sites. Y = experimental verification of the NF-B binding site was found; NF = not found.]

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